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geometry and mesh handling external software comsol multiphysics  (COMSOL Inc)

 
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    COMSOL Inc geometry and mesh handling external software comsol multiphysics
    Geometry and mesh for a model of a neuron. The neuron geometry ( A ) is based on a artistic CAD rendering generated with the public domain version of the software Blender ( http://www.blender.org ). In order to conduct simulations in this geometry, the model was exported in the STL surface mesh format, imported into the open-source meshing package Gmsh , where the boundary was re-parametrized and the domain subsequently meshed with a volume mesh in 3D. The resulting mesh was then converted into a Comsol <t>Multiphysics</t> 3.5a model to serve as a geometry description for the URDME model. Assembly of active transport jump rate constants are conducted by URDME on the unstructured mesh shown in ( B ). For a mathematical background on how to obtain these constants on the unstructured mesh, see . URDME’s capability to use an unstructured mesh made up of tetrahedral and triangular elements is of vital importance in order to be able to resolve the complex geometry of the neuron.
    Geometry And Mesh Handling External Software Comsol Multiphysics, supplied by COMSOL Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/geometry and mesh handling external software comsol multiphysics/product/COMSOL Inc
    Average 90 stars, based on 1 article reviews
    geometry and mesh handling external software comsol multiphysics - by Bioz Stars, 2026-06
    90/100 stars

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    1) Product Images from "URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries"

    Article Title: URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries

    Journal: BMC Systems Biology

    doi: 10.1186/1752-0509-6-76

    Geometry and mesh for a model of a neuron. The neuron geometry ( A ) is based on a artistic CAD rendering generated with the public domain version of the software Blender ( http://www.blender.org ). In order to conduct simulations in this geometry, the model was exported in the STL surface mesh format, imported into the open-source meshing package Gmsh , where the boundary was re-parametrized and the domain subsequently meshed with a volume mesh in 3D. The resulting mesh was then converted into a Comsol Multiphysics 3.5a model to serve as a geometry description for the URDME model. Assembly of active transport jump rate constants are conducted by URDME on the unstructured mesh shown in ( B ). For a mathematical background on how to obtain these constants on the unstructured mesh, see . URDME’s capability to use an unstructured mesh made up of tetrahedral and triangular elements is of vital importance in order to be able to resolve the complex geometry of the neuron.
    Figure Legend Snippet: Geometry and mesh for a model of a neuron. The neuron geometry ( A ) is based on a artistic CAD rendering generated with the public domain version of the software Blender ( http://www.blender.org ). In order to conduct simulations in this geometry, the model was exported in the STL surface mesh format, imported into the open-source meshing package Gmsh , where the boundary was re-parametrized and the domain subsequently meshed with a volume mesh in 3D. The resulting mesh was then converted into a Comsol Multiphysics 3.5a model to serve as a geometry description for the URDME model. Assembly of active transport jump rate constants are conducted by URDME on the unstructured mesh shown in ( B ). For a mathematical background on how to obtain these constants on the unstructured mesh, see . URDME’s capability to use an unstructured mesh made up of tetrahedral and triangular elements is of vital importance in order to be able to resolve the complex geometry of the neuron.

    Techniques Used: Generated, Software



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    geometry and mesh handling external software comsol multiphysics  (COMSOL Inc)
    90
    COMSOL Inc geometry and mesh handling external software comsol multiphysics
    Geometry and mesh for a model of a neuron. The neuron geometry ( A ) is based on a artistic CAD rendering generated with the public domain version of the software Blender ( http://www.blender.org ). In order to conduct simulations in this geometry, the model was exported in the STL surface mesh format, imported into the open-source meshing package Gmsh , where the boundary was re-parametrized and the domain subsequently meshed with a volume mesh in 3D. The resulting mesh was then converted into a Comsol <t>Multiphysics</t> 3.5a model to serve as a geometry description for the URDME model. Assembly of active transport jump rate constants are conducted by URDME on the unstructured mesh shown in ( B ). For a mathematical background on how to obtain these constants on the unstructured mesh, see . URDME’s capability to use an unstructured mesh made up of tetrahedral and triangular elements is of vital importance in order to be able to resolve the complex geometry of the neuron.
    Geometry And Mesh Handling External Software Comsol Multiphysics, supplied by COMSOL Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/geometry and mesh handling external software comsol multiphysics/product/COMSOL Inc
    Average 90 stars, based on 1 article reviews
    geometry and mesh handling external software comsol multiphysics - by Bioz Stars, 2026-06
    90/100 stars
    		  Buy from Supplier
    geometry and mesh handling software  (COMSOL Inc)
    90
    COMSOL Inc geometry and mesh handling software
    Geometry and mesh for a model of a neuron. The neuron geometry ( A ) is based on a artistic CAD rendering generated with the public domain version of the software Blender ( http://www.blender.org ). In order to conduct simulations in this geometry, the model was exported in the STL surface mesh format, imported into the open-source meshing package Gmsh , where the boundary was re-parametrized and the domain subsequently meshed with a volume mesh in 3D. The resulting mesh was then converted into a Comsol <t>Multiphysics</t> 3.5a model to serve as a geometry description for the URDME model. Assembly of active transport jump rate constants are conducted by URDME on the unstructured mesh shown in ( B ). For a mathematical background on how to obtain these constants on the unstructured mesh, see . URDME’s capability to use an unstructured mesh made up of tetrahedral and triangular elements is of vital importance in order to be able to resolve the complex geometry of the neuron.
    Geometry And Mesh Handling Software, supplied by COMSOL Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/geometry and mesh handling software/product/COMSOL Inc
    Average 90 stars, based on 1 article reviews
    geometry and mesh handling software - by Bioz Stars, 2026-06
    90/100 stars
    		  Buy from Supplier

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    Geometry and mesh for a model of a neuron. The neuron geometry ( A ) is based on a artistic CAD rendering generated with the public domain version of the software Blender ( http://www.blender.org ). In order to conduct simulations in this geometry, the model was exported in the STL surface mesh format, imported into the open-source meshing package Gmsh , where the boundary was re-parametrized and the domain subsequently meshed with a volume mesh in 3D. The resulting mesh was then converted into a Comsol Multiphysics 3.5a model to serve as a geometry description for the URDME model. Assembly of active transport jump rate constants are conducted by URDME on the unstructured mesh shown in ( B ). For a mathematical background on how to obtain these constants on the unstructured mesh, see . URDME’s capability to use an unstructured mesh made up of tetrahedral and triangular elements is of vital importance in order to be able to resolve the complex geometry of the neuron.

    Journal: BMC Systems Biology

    Article Title: URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries

    doi: 10.1186/1752-0509-6-76

    Figure Lengend Snippet: Geometry and mesh for a model of a neuron. The neuron geometry ( A ) is based on a artistic CAD rendering generated with the public domain version of the software Blender ( http://www.blender.org ). In order to conduct simulations in this geometry, the model was exported in the STL surface mesh format, imported into the open-source meshing package Gmsh , where the boundary was re-parametrized and the domain subsequently meshed with a volume mesh in 3D. The resulting mesh was then converted into a Comsol Multiphysics 3.5a model to serve as a geometry description for the URDME model. Assembly of active transport jump rate constants are conducted by URDME on the unstructured mesh shown in ( B ). For a mathematical background on how to obtain these constants on the unstructured mesh, see . URDME’s capability to use an unstructured mesh made up of tetrahedral and triangular elements is of vital importance in order to be able to resolve the complex geometry of the neuron.

    Article Snippet: An interface to a mature geometry and mesh handling external software (Comsol Multiphysics) provides for a stable and interactive environment for model construction.

    Techniques: Generated, Software